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-   -   NA12878 truth sets? (http://seqanswers.com/forums/showthread.php?t=24872)

brofallon 11-09-2012 07:50 AM

NA12878 truth sets?
 
Howdy all, I'm searching for high-quality sets of variant calls for NA12878 to be used as a gold standard. Anyone have ideas of where to look for a super high quality NA12878 variant call set? Anyone willing to share their own?
Thanks!

jparsons 11-09-2012 10:02 AM

This presentation gave the impression that the PGP 12878 was pretty impressive.

http://www.slideshare.net/GenomeInAB...enomes-project

And the illumina site at least says the variant calls have been uploaded to public databases.

http://www.illumina.com/platinumgenomes/
http://www.ebi.ac.uk/ena/data/view/ERP001229

Not really my area but it might help you anyway.


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