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-   -   starBase v2.0: decoding miRNA-ncRNA, miRNA-ceRNA and protein-RNA interactions (http://seqanswers.com/forums/showthread.php?t=34025)

rnaNGS 09-26-2013 03:18 AM

decoding miRNA-ncRNA, miRNA-ceRNA and protein-RNA interactions from CLIP-Seq data
 
starBase is an integrated platform that can be use for decoding miRNA-mRNA, miRNA-lncRNA, miRNA-circRNA, miRNA-pseudogene, ceRNA-ceRNA and protein-RNA interaction maps from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) data.

starBase v2.0 now provides visualization, analysis, discovery and downloading of above-mentioned large-scale functional genomics data.

Currently, starBase v.20 includes (1)108 CLIP-Seq datasets, (2)~500,000 miRNA-mRNA interactions, (3)~10,000 miRNA-lncRNA interactions (4)~16,000 miRNA-pseudogene interactions, (5)~9,000 miRNA-circRNA interactions, (6)~10,000 ceRNA pairs, (7)~300,000 protein-RNA interactions, (8) two tools for functional annotation from ceRNA and miRNA regulatory networks.

starBase v2.0 is freely available at http://starbase.sysu.edu.cn/.


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