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ddoopus 11-02-2014 02:17 PM

na12878 ground truth SVs

Are there any available ground truth SV sets for the individual na12878 beyond what is presented in additional material of "Mapping copy number variation by population-scale genome sequencing" from Mills et al and "LUMPY: a probabilistic framework for structural variant discovery" from Layer et al? I tried looking, but haven't been able to find anything referenced beyond these two.


m_two 11-03-2014 11:57 AM

1000 Genomes FTP site has some recent data

ddoopus 11-04-2014 04:28 PM

These are raw reads though, not validated SV calls.

jparsons 11-10-2014 02:34 PM

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