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-   -   na12878 ground truth SVs (http://seqanswers.com/forums/showthread.php?t=47968)

ddoopus 11-02-2014 02:17 PM

na12878 ground truth SVs
 
Hi,

Are there any available ground truth SV sets for the individual na12878 beyond what is presented in additional material of "Mapping copy number variation by population-scale genome sequencing" from Mills et al and "LUMPY: a probabilistic framework for structural variant discovery" from Layer et al? I tried looking, but haven't been able to find anything referenced beyond these two.

Thanks!

m_two 11-03-2014 11:57 AM

1000 Genomes FTP site has some recent data

ftp://ftp.1000genomes.ebi.ac.uk/vol1...umina_Platinum

ftp://ftp.1000genomes.ebi.ac.uk/vol1...na12878_pacbio

ftp://ftp.1000genomes.ebi.ac.uk/vol1...2878_moleculo/

ddoopus 11-04-2014 04:28 PM

These are raw reads though, not validated SV calls.

jparsons 11-10-2014 02:34 PM

http://genomeinabottle.org/blog-entr...lable-ftp-site


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