Hello!
I'm sorry for the stupid question, but I'm new in metagenomic and metatranscriptomic stuffs... I'd like to map my Hiseq shotgun metatranscriptomic reads to some reference genomes (I already know the microbial community composition, since I analysed 16S data), using botwie or bwa. The question is: do I have to map each sample to each genome? or is there a way to map to more genomes at the same time? And if not, how can I merge the multiple mapping files from the same sample, then?
Thanks a bunch
Francesca
I'm sorry for the stupid question, but I'm new in metagenomic and metatranscriptomic stuffs... I'd like to map my Hiseq shotgun metatranscriptomic reads to some reference genomes (I already know the microbial community composition, since I analysed 16S data), using botwie or bwa. The question is: do I have to map each sample to each genome? or is there a way to map to more genomes at the same time? And if not, how can I merge the multiple mapping files from the same sample, then?
Thanks a bunch
Francesca
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