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adapter trimming alignment amplicon sequencing annovar assembly atac-seq bioanalyzer blast bowtie breakdancer bwa bwa-mem bwa sampe chip-seq cluster density cnvnator covaris coverage cuffcompare cuffdiff cufflinks cuffmerge cummerbund cutadapt deseq deseq2 dexseq error error reading ebwt array fastq fastqc fpkm gatk hiseq 4000 htseq-count illumina insert size install ion torrent junction search failed metagenomics mirna miseq newbler new sequencer nextera nextseq novoalign pacbio pindel prep_reads quality rna-seq rnaseq rpkm samtools sanger/illumina 1.9 segmentation fault soapdenovo strand-specific sureselect tophat trimmomatic trinity truseq variant calling varscan vcf vcftools velvet

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