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adapter adapter trimming annotation annovar assembly atac-seq bioanalyzer bisulphite blast bowtie breakdancer bwa chip-seq cluster density cnvnator covaris coverage cuffcompare cuffdiff cufflinks cummerbund deseq dexseq error fastq fastqc fpkm gatk gtf htseq-count illumina ion torrent java junction search failed lncrna mask metagenomics mirna miseq mpileup newbler nextera pacbio picard pindel prep_reads primer primers rna-seq rna-seqc rnaseq rpkm samtools sanger/illumina 1.9 segmentation fault seq seqmonk snp snp annotation soap solid special issue strand-specific tophat tophat-fusion-post truseq varscan vcf vcftools velvet


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