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Forum: Bioinformatics 11-11-2016, 07:40 AM
Replies: 0
Views: 1,372
Posted By Anti
Gene cluster identification using gff file

Hello everyone.
I have a list of genes. I want to know which of these are separated by nomore than eight genes (not present in the gene list) on genome using a gff file.
Forum: Bioinformatics 04-07-2015, 01:05 AM
Replies: 0
Views: 1,101
Posted By Anti
InParanoid: stalling analisys?

Hello everyone,
i'm using inparanoid 4.1 for a analysis with a dataset of 80.000 proteins. This analysis is underway for a week, but it's not over. Will inparanoid finish the analysis? I try to run...
Forum: Bioinformatics 02-02-2015, 12:58 AM
Replies: 4
Views: 8,496
Posted By Anti
How to Extract Multiple Sequence from Multi Fasta File by ID list

I have a list of ids in .txt format and a multi fasta file with sequences. I need to extract sequences with the IDs in the list.

Can you help me, please?
Forum: Bioinformatics 01-12-2015, 03:42 AM
Replies: 3
Views: 5,568
Posted By Anti
Thanks so much, dpryan! but this command don't...

Thanks so much, dpryan! but this command don't create a bam from two cromosomes.

i used this :

samtools merge merged.bam <(samtools view -b SE.bam chr1) & (samtools view -b SE.bam chr2)
Forum: Bioinformatics 01-12-2015, 02:05 AM
Replies: 3
Views: 5,568
Posted By Anti
Samtools: extract multiple cromosomes/scaffolds from bam file

I want to create a bam file containing three or four chromosomes/scaffolds.
I only know this command

samtools view -b align.sort.bam Chr06 > chr06.bam
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