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Forum: Bioinformatics 10-18-2010, 06:33 PM
Replies: 1
Views: 12,722
Posted By gengen
Cufflinks library-type for SOLiD strand specific single data

I have SOLiD strand specific single reads and am using Cufflinks(0.9.1) and Tophat(1.1.1).

Cufflinks help page says library-types are the following
illumina-stranded-paired-end
...
Forum: Bioinformatics 12-15-2009, 11:40 PM
Replies: 292
Views: 150,976
Posted By gengen
question about scores of INDEL in pileup output file

I have a question about output file of pileup command.

According to samtools FAQ...
Forum: Bioinformatics 06-20-2009, 08:23 PM
Replies: 19
Views: 8,062
Posted By gengen
How to create frg file from SRA data ?

I want to run Celera Assembler usign SRA 454 data, but SRA doesn't provide sff data. They only provide FASTA and FASTQ.
So, how should I do ? I could do this by coverting FASTQ to FASTA and quality...
Forum: General 05-07-2009, 09:38 PM
Replies: 67
Views: 78,061
Posted By gengen
How can I access ?

Your map sounds very interesting and helpful !

If your map is public, please let me know how can I access your map.

Maybe, I could upload some information of Japan
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