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Forum: Bioinformatics 08-11-2019, 09:45 PM
Replies: 8
Views: 1,070
Posted By SeqGeq
SeqGeq is one to check out. Webinars: ...

SeqGeq is one to check out.
Webinars:
www.flowjo.com/learn/webinars (https://www.flowjo.com/learn/webinars)

Documentation:
docs.flowjo.com/seqgeq (http://docs.flowjo.com/seqgeq)

Download:...
Forum: Bioinformatics 01-24-2019, 06:40 AM
Replies: 10
Views: 2,116
Posted By SeqGeq
Yes SeqGeq can analyze data from 10x's pipeline,...

Yes SeqGeq can analyze data from 10x's pipeline, after processing in CellRanger.

CellRanger is not a tertiary analysis platform, it produces a data matrix of reads per gene per cell from FASTQ...
Forum: Bioinformatics 01-23-2019, 05:48 PM
Replies: 10
Views: 2,116
Posted By SeqGeq
I'm a huge fan of the Seurat analysis pipeline...

I'm a huge fan of the Seurat analysis pipeline (we implemented that as a free plugin for SeqGeq for exactly that reason); I didn't mean to mislead.

To your point about reproducibility, I believe...
Forum: Bioinformatics 01-23-2019, 07:33 AM
Replies: 10
Views: 2,116
Posted By SeqGeq
Alternative Analysis Platforms

Seurat is a beautiful R package for one workflow in analyzing data generated from CellRanger (and other scRNA-Seq pipelines), built by some top tier talent at NYU.

This can be utilized via the...
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