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Search: Posts Made By: sudhirvarma
Forum: Bioinformatics 06-06-2013, 12:20 PM
Replies: 2
Views: 2,006
Posted By sudhirvarma
If you are comfortable with any of the common...

If you are comfortable with any of the common short-read aligners you can also use them, after making the corresponding index using your reference sequence. For example, using bowtie2

#Build index...
Forum: Bioinformatics 06-06-2013, 09:30 AM
Replies: 6
Views: 3,250
Posted By sudhirvarma
SRA is the source

Hi SquirrelSeq
The NCBI Short Read Archive has several E. coli and S. cervisiae datasets, e.g.

E. coli (http://www.ncbi.nlm.nih.gov/sra/?term=%22Escherichia+coli%22[orgn%3A__txid562])

S....
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