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Search: Posts Made By: Brian Bushnell
Forum: Bioinformatics 07-24-2014, 09:39 AM
Replies: 6
Views: 2,736
Posted By Brian Bushnell
Sham, You might try BBMap...

Sham,

You might try BBMap (http://seqanswers.com/forums/showthread.php?t=41057), which is quite sensitive and supports short seeds (value of 'k'). By default k=13 and it gets exponentially slower...
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