SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 6 of 6
Search took 0.00 seconds.
Search: Posts Made By: juanc
Forum: Bioinformatics 02-16-2016, 09:29 AM
Replies: 10
Views: 4,326
Posted By juanc
So I executed the commands and the output report...

So I executed the commands and the output report was telling me that it was looking for the .sai files in the "clean" directories. I decided to do steps 1-4 (below) in those directories and move over...
Forum: Bioinformatics 02-15-2016, 02:21 PM
Replies: 10
Views: 4,326
Posted By juanc
I updated my previous post.

I updated my previous post.
Forum: Bioinformatics 02-15-2016, 12:40 PM
Replies: 10
Views: 4,326
Posted By juanc
1. fastq naming: taxon86-READ1.fastq.gz +...

1. fastq naming: taxon86-READ1.fastq.gz + taxon86-READ2.fastq.gz and taxon24-READ1.fastq.gz + taxon24-READ2.fastq.gz, etc.

2. sai file naming: taxon86-read1.sai + taxon86-read2.sai and...
Forum: Bioinformatics 02-15-2016, 10:25 AM
Replies: 10
Views: 4,326
Posted By juanc
Sorry, I meant for the actual loop.

Sorry, I meant for the actual loop.
Forum: Bioinformatics 02-15-2016, 08:52 AM
Replies: 10
Views: 4,326
Posted By juanc
Thanks for the suggestion. Would it be possible...

Thanks for the suggestion. Would it be possible to provide a quick example?
Forum: Bioinformatics 02-14-2016, 09:30 AM
Replies: 10
Views: 4,326
Posted By juanc
bwa sampe on multiple samples at once

I'm looking to loop through many samples using the bwa sampe command.

Here is what the command looks like for one sample:

bwa sampe ref.fasta read1.sai read2.sai read1.fastq.gz read2.fastq.gz...
Showing results 1 to 6 of 6

 


All times are GMT -8. The time now is 10:46 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO