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Search: Posts Made By: GenoMax
Forum: General 10-23-2014, 08:00 AM
Replies: 9
Views: 1,320
Posted By GenoMax
If you are comfortable with VM's then go the blat...

If you are comfortable with VM's then go the blat route. Results will be fast (with a bacterial genome) and you won't have to do any scripting (unless you want to parse the blat result in some way).
Forum: General 10-23-2014, 06:13 AM
Replies: 9
Views: 1,320
Posted By GenoMax
Don't think there is a free local GUI alignment...

Don't think there is a free local GUI alignment program for windows. There are commercial ones (CLC, Geneious etc).

Ask your bioinformatics person to show you how to use linux in a virtual...
Forum: General 10-23-2014, 05:43 AM
Replies: 9
Views: 1,320
Posted By GenoMax
You could try blast2sequences at NCBI:...

You could try blast2sequences at NCBI: http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastSearch&BLAST_SPEC=blast2seq&LINK_LOC=align2seq

It may be easy to use blat ...
Forum: General 10-23-2014, 05:22 AM
Replies: 9
Views: 1,320
Posted By GenoMax
How long is the sequence you are trying to find a...

How long is the sequence you are trying to find a match for? Do you need a visual (GUI) program or can you use unix command line?
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