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Forum: Bioinformatics 10-04-2018, 05:21 PM
Replies: 3
Views: 377
Posted By Meyana
Please refer to the bbtools manual here: ...

Please refer to the bbtools manual here:
https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/

And the callvariants page here:...
Forum: Bioinformatics 10-03-2018, 12:23 AM
Replies: 3
Views: 377
Posted By Meyana
Might be a limit to the indel caller. I'd...

Might be a limit to the indel caller.

I'd suggest using bbmap for mapping and CallVariants (also in the BBtools suite), I'm successfully calling long (>10kb) indels using 150bp paired end reads...
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