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Forum: Bioinformatics 01-21-2016, 12:50 AM
Replies: 0
Views: 972
Posted By antgomo
Differentially Methylated Regions (DMRs) finding in time series experiment


I am dealing with Whole Genome Bisulfite Data (WGBS), form a time series experiment (4 stages), and I am wondering i f I could do Differentially Methylated Regions (DMRs) in a time series...
Forum: Bioinformatics 11-01-2012, 04:19 PM
Replies: 1
Views: 2,185
Posted By antgomo
Bioinformatics protocols for differential RNAseq antisense expression


I am analyzing data coming form Illumina directional RNAseq procedure, in order to find antisense expression. I ran Tophat with the corresponding flag, --fr-secondstrand, following the...
Forum: Bioinformatics 03-28-2012, 09:49 PM
Replies: 0
Views: 2,460
Posted By antgomo
Comparing densities of Chip-seq tag counts and plotting them

I have a matrix of Chip-seq results data like this for 26000 genes

LncRNA_ID LncRNA_Name Control_Raw_TagCount ICLIP_EZH2_Raw_TagCount
1 AK092525 ...
Forum: Bioinformatics 01-04-2012, 01:10 AM
Replies: 1
Views: 2,407
Posted By antgomo
Bisulfite analysis with Illumina FastQ from different lanes

Hi everybody,

I'm a newbie in NGS bisulfite Methylation analysis, so first, apologies iof the question is so simple but I couldn't find any topic related to: Anyway, we receive samples from BGI...
Forum: Illumina/Solexa 12-07-2011, 12:56 AM
Replies: 5
Views: 4,484
Posted By antgomo
How to fix Illumina FASTQ files with read length varies errors

How to fix FASTQ files with read length varies errors

Dear List,

I am a newbie in NGS analysis, I've got a collection of FASTQ files coming from an Illumina NGS analysis, I tried to...
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