SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 6 of 6
Search took 0.00 seconds.
Search: Posts Made By: tickteng
Forum: Metagenomics 05-29-2020, 03:09 PM
Replies: 0
Views: 2,993
Posted By tickteng
SURPI database

Hi,

I am trying to perform this metagenomic pipeline (https://github.com/chiulab/SURPI-plus-dist).
I was able to create the container and run the command to download library.
However, near the...
Forum: General 06-25-2019, 07:41 PM
Replies: 3
Views: 4,140
Posted By tickteng
how about porechop...

how about porechop (https://github.com/rrwick/Porechop)?
Forum: Bioinformatics 06-04-2019, 03:44 PM
Replies: 3
Views: 792
Posted By tickteng
hi, thanks for the reply. So let me make it more...

hi, thanks for the reply. So let me make it more clear. I am using nanopore to sequence an amplicon of pathogen A. I tried to blast the sequence using 2 different databases. The result both showed...
Forum: Bioinformatics 06-04-2019, 12:03 AM
Replies: 3
Views: 792
Posted By tickteng
BLAST with 2 different databases

Hi, I have some sequence results that I blast to 2 different databases (one is NCBI's nt and one other local databases), the result comes out a bit differently. The hit were similar, but the number...
Forum: Oxford Nanopore 04-24-2019, 12:18 AM
Replies: 2
Views: 2,803
Posted By tickteng
hmm, not really like that. So beside the one...

hmm, not really like that. So beside the one provided by nanopore, I plan to attach some kind of index to the primer itself, so the result can be divided further in one barcode.
Forum: Oxford Nanopore 04-23-2019, 05:26 PM
Replies: 2
Views: 2,803
Posted By tickteng
Newbie: Primer with index

Hi everyone, kinda new to the whole sequencing. So I want to run multiple sample in minion. There is barcode provided by oxford nanopore, but i also would like to attach index to my pcr.

I am...
Showing results 1 to 6 of 6

 


All times are GMT -8. The time now is 12:29 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO