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Forum: Bioinformatics 10-23-2013, 11:22 AM
Replies: 0
Views: 1,238
Posted By IgorFobia
VarScan readcounts command gives error with mpileup

I am trying to run VarScan with readcounts option, but I keep getting this error



This is the command I'm using:


Can you please help me?
Thanks
Forum: Bioinformatics 07-24-2013, 09:45 AM
Replies: 2
Views: 4,630
Posted By IgorFobia
Description of output format is missing

Hi,

actually I am looking in Mauve documentation and I don't find any description of the output giles it actually gives (the ones described by Laura)...
Forum: General 03-04-2011, 09:35 AM
Replies: 3
Views: 1,630
Posted By IgorFobia
Thank you for your very fast answer. So we...

Thank you for your very fast answer.

So we know the 5' to 3' orientation even for sequenced (not annotated) reads, don't we?
Forum: General 03-04-2011, 08:35 AM
Replies: 3
Views: 1,630
Posted By IgorFobia
Sequencing the same part: how many possible way?

Hi,

I don't know a lot about sequencing, my question should be trivial but I cannot find the answer on the web...

Suppose that a genome contains a certain sequence, like AGTACATGG.

My...
Forum: Wiki Discussion 09-03-2010, 05:52 AM
Replies: 3
Views: 15,178
Posted By IgorFobia
Thank you! I was also thinking about making...

Thank you!

I was also thinking about making a new page about a software. Is there a guideline? Where can I learn the wiki syntax?
Forum: Wiki Discussion 09-03-2010, 02:53 AM
Replies: 3
Views: 15,178
Posted By IgorFobia
Add a reference with no PubMed ID

Hi,

I'd like to edit a wiki page related to a software and add a new reference, but the papers I should add are not indexed in PubMed.

"To add a reference for XXX, enter the PubMed ID in the...
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