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Forum: Ion Torrent 05-17-2017, 03:36 AM
Replies: 37
Views: 39,308
Posted By jchoo
hi, Have anyone try analysis the error rate of...

hi,
Have anyone try analysis the error rate of per base in amplicons? We found lots of sites with error rate larger than 0.01, any idea why this happen?
Forum: Bioinformatics 06-24-2013, 01:36 AM
Replies: 4
Views: 2,273
Posted By jchoo
CNVnator need help

I am using CNVnator recently, preparing to call CNV in a 200 samples with 6X average coverage population, here is the command I used:
cnvnator -root m.root -genome hg19 -chrom 22 -tree...
Forum: Bioinformatics 06-24-2012, 11:13 PM
Replies: 0
Views: 1,590
Posted By jchoo
Lightbulb large samples calling indel and snp with GATK

hi, is there any papers public recently using GATK to call variants with a large sample size? thanks a lot~~
Forum: Bioinformatics 06-20-2012, 02:12 AM
Replies: 0
Views: 637
Posted By jchoo
how does the vcf QUAL acctructly caculate?

hi, is anybody knows how does the QUAL colum accturely caculate? thanks~
Forum: Bioinformatics 06-20-2012, 01:01 AM
Replies: 1
Views: 1,975
Posted By jchoo
have you got this qusetion solved ?

have you got this qusetion solved ?
Forum: Bioinformatics 05-11-2012, 01:51 AM
Replies: 7
Views: 1,843
Posted By jchoo
not yet now, maybe the forum of Broad may help……

not yet now, maybe the forum of Broad may help……
Forum: Bioinformatics 03-28-2012, 08:29 PM
Replies: 7
Views: 1,843
Posted By jchoo
the same question, need help too~~

the same question, need help too~~
Forum: General 06-29-2011, 10:12 PM
Replies: 13
Views: 9,541
Posted By jchoo
beyond now,most of cnv detector are based on the...

beyond now,most of cnv detector are based on the assumption :the distribution of depth are possion disrtibution,and the most important things are the exome sequencing data are not,so...:)
Forum: Illumina/Solexa 04-27-2010, 04:26 AM
Replies: 145
Views: 301,042
Posted By jchoo
thanks,thats what i want,by the way weather all...

thanks,thats what i want,by the way weather all the illumina use the same adapter?
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