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Search: Posts Made By: Katherine_B
Forum: General 01-03-2019, 04:50 PM
Replies: 11
Views: 12,407
Posted By Katherine_B
Could you possibly share the igvtools command...

Could you possibly share the igvtools command line to do this? I have been trying to figure out how to get the base coverage values at each position from my BAM files. I'd want to know which base is...
Forum: Bioinformatics 04-16-2017, 04:26 PM
Replies: 4
Views: 1,185
Posted By Katherine_B
I have a reference genome which is broken into...

I have a reference genome which is broken into exons (this data was given to me and I am to handle it). I guess I should call it a reference exome to be specific.
I have exome data for other species...
Forum: Bioinformatics 04-16-2017, 08:50 AM
Replies: 4
Views: 1,185
Posted By Katherine_B
Do you mean that I align my exome data for...

Do you mean that I align my exome data for species A with the whole genome for zebrafish using NGS aligner? Some of the exons in the data are very small, like 10bp long only. Won't that cause...
Forum: Bioinformatics 04-12-2017, 02:40 PM
Replies: 4
Views: 1,185
Posted By Katherine_B
Unhappy How do you extract regions of interest when you have massive exome data?

Hi everyone,

I am new to bioinformatics and I have been having trouble with exome data. I've practised using standalone BLAST+ and I've understood how to create databases with my own sequences,...
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