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Forum: Bioinformatics 01-31-2020, 04:00 AM
Replies: 4
Views: 577
Posted By fkrueger
That sounds like you are working with paired-end...

That sounds like you are working with paired-end data. In that case the Read 1 and Read 2 will be ends of the fragment you are sequencing, and they may well be further apart. In this case it doesn't...
Forum: Bioinformatics 01-31-2020, 12:54 AM
Replies: 4
Views: 577
Posted By fkrueger
Hi Hedi, Every alignment that is reported by...

Hi Hedi,

Every alignment that is reported by Bismark are unique hits (ambiguosly aligning reads are discarded, and not-aligning reads - well - don't align at all). So you can simply look at the...
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