SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 14 of 14
Search took 0.00 seconds.
Search: Posts Made By: chengeng
Forum: Bioinformatics 05-08-2010, 06:13 PM
Replies: 12
Views: 4,201
Posted By chengeng
Simon Anders, Thanks. But Oases paper hasn't...

Simon Anders,

Thanks. But Oases paper hasn't published, we can't cite it.
Forum: Bioinformatics 05-08-2010, 06:08 PM
Replies: 12
Views: 4,201
Posted By chengeng
Siva, Thank you very much for your help. I...

Siva,

Thank you very much for your help. I will try it again.:)
Forum: Bioinformatics 05-08-2010, 12:33 AM
Replies: 12
Views: 4,201
Posted By chengeng
Question Assemble RNA-Seq reads

Hi, everyone

Recently, I wanted to find some software which can assemble the RNA-Seq reads into transcripts. I have tried Velvet and Cufflinks. But because velvet is mainly design to assemble DNA...
Forum: Bioinformatics 12-17-2009, 05:16 PM
Replies: 5
Views: 22,640
Posted By chengeng
Thank you very much. I understand it now.:)

Thank you very much. I understand it now.:)
Forum: Bioinformatics 12-17-2009, 02:09 AM
Replies: 5
Views: 22,640
Posted By chengeng
scaffold and contig

Hi all,
Does somebody know what's scaffold and the differences between scaffold and contigs? Thank you very much.

Geng Chen
Forum: Bioinformatics 08-19-2009, 06:06 PM
Replies: 6
Views: 2,318
Posted By chengeng
Hello, You can email Cole...

Hello,
You can email Cole Trapnell(cole@cs.umd.edu).He is the author of TopHat and Bowtie.

All the best,

Geng
Forum: Bioinformatics 08-19-2009, 06:04 PM
Replies: 6
Views: 2,318
Posted By chengeng
Hello, You can send E-mail to Cole...

Hello,
You can send E-mail to Cole Trapnell(cole@cs.umd.edu). He is the author of TopHat and Bowtie.

All the best,

Geng
Forum: Bioinformatics 08-11-2009, 09:49 PM
Replies: 6
Views: 2,318
Posted By chengeng
Hi, Could you tell me the parameters you set?

Hi,
Could you tell me the parameters you set?
Forum: Bioinformatics 08-05-2009, 08:39 PM
Replies: 2
Views: 2,270
Posted By chengeng
Hi, I was ever met such errors.This happens...

Hi,
I was ever met such errors.This happens when you don't put bowtie in your PATH.

Geng
Forum: Bioinformatics 07-28-2009, 12:19 AM
Replies: 1
Views: 1,899
Posted By chengeng
How to use short reads to find transcripts and non-coding RNA

Hi all,
I have some short reads of human.I wanted to use them to find transcripts and non-coding RNA,but I was just study bioinformatics and knew little about this field.Could you give me some...
Forum: Bioinformatics 07-15-2009, 08:14 AM
Replies: 14
Views: 12,990
Posted By chengeng
Thank you very much.The version of gcc which I...

Thank you very much.The version of gcc which I use is 4.1.1 20061011 (Red Hat 4.1.1-30).Yes,I was installed it via the fedora's package manager,but failed to install it.I don know why?
Forum: Bioinformatics 07-14-2009, 10:07 PM
Replies: 14
Views: 12,990
Posted By chengeng
Thanks.I was tried these commands before,but can...

Thanks.I was tried these commands before,but can not compile successfully.
Forum: Bioinformatics 07-14-2009, 10:05 PM
Replies: 14
Views: 12,990
Posted By chengeng
Problems

Thanks.My operating system is fedora6.The commads I tried:./configure,but it output :
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for...
Forum: Bioinformatics 07-14-2009, 08:54 PM
Replies: 14
Views: 12,990
Posted By chengeng
Install TopHat

Hi,all
I am a novel user .I have downloaded the tophat software and wanted to use it to deal with some RNA sequences,but failed to install tophat.I want to know what I need to do before...
Showing results 1 to 14 of 14

 


All times are GMT -8. The time now is 11:37 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO