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Search: Posts Made By: Phoenix_ICE
Forum: Academic/Non-Profit Jobs 12-05-2019, 12:59 AM
Replies: 0
Views: 625
Posted By Phoenix_ICE
Post-Doctoral Researchers/Bioinformaticians in Henan University

Post-Doctoral Researchers/Bioinformaticians in Henan University

Institute: Henan University

Department: State Key Laboratory of Crop Stress Adaptation and Improvement
...
Forum: Bioinformatics 11-13-2018, 05:26 AM
Replies: 1
Views: 666
Posted By Phoenix_ICE
FLASh is a good choice to try. ...

FLASh is a good choice to try.
https://ccb.jhu.edu/software/FLASH/
Forum: Bioinformatics 04-12-2018, 01:11 AM
Replies: 3
Views: 2,069
Posted By Phoenix_ICE
Available here...

Available here ftp://ftpmips.helmholtz-muenchen.de/plants/REdat/
Forum: Bioinformatics 04-10-2015, 12:49 AM
Replies: 1
Views: 890
Posted By Phoenix_ICE
The most difficult part is to recognize the...

The most difficult part is to recognize the intact ORF. Are you sure each sequence contains a complete ORF, not partial?
Forum: Bioinformatics 03-26-2015, 04:08 AM
Replies: 2
Views: 1,324
Posted By Phoenix_ICE
The first number might refer to the Num-th line...

The first number might refer to the Num-th line in VCF, and the second number might refer to the alleles, each line might refers to an alignment?

How to indicate a Paired END?
Forum: Bioinformatics 03-26-2015, 04:00 AM
Replies: 2
Views: 1,324
Posted By Phoenix_ICE
Help with HapTree reads input format

Dear All,

I am going to try HapTree to phase the SNP/MNP/InDel/Complex in my VCF, and want to give HapTree a try. But I really have no idea how to prepare the reads input (instead of BAM or...
Forum: Bioinformatics 01-22-2015, 11:52 AM
Replies: 7
Views: 1,455
Posted By Phoenix_ICE
It sounds easy. But I really have no idea about...

It sounds easy. But I really have no idea about the score! How to calculate the score?
Which one is the most important, and which one is the second, of your 3 limitations
Forum: Bioinformatics 07-30-2014, 01:36 AM
Replies: 4
Views: 1,149
Posted By Phoenix_ICE
reference...

reference -----------------------------------------------------------
read1 ----------T-------------
read2 -------------------------
read3 ------T------------------
read4 ...
Forum: Bioinformatics 07-28-2014, 12:38 AM
Replies: 4
Views: 1,149
Posted By Phoenix_ICE
[Help] How to get those reads containing specified SNP?

Hi, all,

I am a new drummy for bioinformatics.

After SNP calling using GATK/freebayes, we usually get a SNP list. Now I have some interest SNP sites. Does anyone know how to identify those...
Forum: Bioinformatics 07-10-2014, 12:39 AM
Replies: 1
Views: 2,341
Posted By Phoenix_ICE
You need to compile the multi-threading when you...

You need to compile the multi-threading when you install/compile the perl using '-Dusethreads'
Forum: Bioinformatics 09-19-2013, 08:30 AM
Replies: 5
Views: 2,192
Posted By Phoenix_ICE
RNASeqReadSimulator: A Simple RNA-Seq Read...

RNASeqReadSimulator: A Simple RNA-Seq Read Simulator
http://alumni.cs.ucr.edu/~liw/rnaseqreadsimulator.html
RNA Seq Simulator: a part of USeq
http://useq.sourceforge.net/
FluxSimulator...
Forum: Bioinformatics 03-11-2013, 09:09 AM
Replies: 2
Views: 1,272
Posted By Phoenix_ICE
Excellent. I am working on wheat bioinformatics....

Excellent. I am working on wheat bioinformatics. That helps a lot.
Forum: Bioinformatics 08-20-2012, 04:11 PM
Replies: 3
Views: 1,590
Posted By Phoenix_ICE
Smile dCAPS http://helix.wustl.edu/dcaps/dcaps.html ...

dCAPS
http://helix.wustl.edu/dcaps/dcaps.html

Genefisher2
http://bibiserv.techfak.uni-bielefeld.de/genefisher2/
Forum: Bioinformatics 05-28-2012, 04:21 PM
Replies: 1
Views: 1,329
Posted By Phoenix_ICE
Smile Ncbi geo & sra

Ncbi geo & sra
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