Forum: Bioinformatics
08-05-2018, 06:32 AM
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Replies: 104
Views: 41,706
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Forum: Bioinformatics
06-30-2016, 03:06 AM
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Replies: 104
Views: 41,706
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Forum: Bioinformatics
10-20-2015, 04:16 PM
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Replies: 104
Views: 41,706
I've recently discovered that these are...
I've recently discovered that these are transcript sequences, not genomic sequences (despite the initial assurance against that). So the 140,000x coverage and 500x coverage could possibly be for...
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Forum: Bioinformatics
10-17-2015, 04:48 AM
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Replies: 104
Views: 41,706
Increasing k didn't help. If anything, it made...
Increasing k didn't help. If anything, it made the assembly worse. I've been able to generate 110 contigs with a coverage >500 and average length around 1000bp. I've attached a visual representation...
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Forum: Bioinformatics
10-16-2015, 02:23 AM
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Replies: 104
Views: 41,706
Thanks SNPsaurus. I looked at the examples that...
Thanks SNPsaurus. I looked at the examples that were provided in the first post and assumed that they were the most appropriate way to run the program. It seems a little odd that an assembler would...
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Forum: Bioinformatics
10-14-2015, 08:54 PM
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Replies: 104
Views: 41,706
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Forum: Bioinformatics
10-14-2015, 06:53 PM
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Replies: 104
Views: 41,706
Ruh roh. Looks like I can't do the merge with...
Ruh roh. Looks like I can't do the merge with Java 1.6:
/media/disk2/bbtools/bbmap/bbmerge.sh in=trimmed_NZGL01795_both_1P.fq.gz in2=trimmed_NZGL01795_both_2P.fq.gz out=merged_assembled.fq...
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Forum: Bioinformatics
10-14-2015, 06:23 PM
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Replies: 104
Views: 41,706
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Forum: Bioinformatics
10-13-2015, 04:38 AM
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Replies: 104
Views: 41,706
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Forum: Bioinformatics
10-13-2015, 03:40 AM
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Replies: 104
Views: 41,706
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Forum: Bioinformatics
10-12-2015, 04:31 PM
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Replies: 104
Views: 41,706
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Forum: Bioinformatics
10-12-2015, 03:33 PM
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Replies: 104
Views: 41,706
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