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Forum: RNA Sequencing 04-24-2014, 04:56 AM
Replies: 3
Views: 2,770
Posted By eszter.ari
Dear David, Thanks for your remarks and...

Dear David,

Thanks for your remarks and questions. We will improve the description of the ReCOG script!



You are absolutely right!
Forum: Bioinformatics 04-11-2014, 05:35 AM
Replies: 5
Views: 2,526
Posted By eszter.ari
Take a look at our read counter tool:...

Take a look at our read counter tool: http://seqanswers.com/forums/showthread.php?p=134850
https://code.google.com/p/recog/
Forum: Bioinformatics 04-11-2014, 05:34 AM
Replies: 3
Views: 1,692
Posted By eszter.ari
Take a look at our read counter tool:...

Take a look at our read counter tool: http://seqanswers.com/forums/showthread.php?p=134850
https://code.google.com/p/recog/
Forum: Bioinformatics 04-11-2014, 01:18 AM
Replies: 3
Views: 2,086
Posted By eszter.ari
Take a look at our read counter tool that does...

Take a look at our read counter tool that does not count read-pairs mapped to the same-strand overlapping part of genes: http://seqanswers.com/forums/showthread.php?p=134850...
Forum: Bioinformatics 04-11-2014, 01:17 AM
Replies: 2
Views: 2,486
Posted By eszter.ari
Take a look at our read counter tool that does...

Take a look at our read counter tool that does not count read-pairs mapped to the same-strand overlapping part of genes: http://seqanswers.com/forums/showthread.php?p=134850...
Forum: Bioinformatics 08-14-2013, 02:20 AM
Replies: 0
Views: 841
Posted By eszter.ari
Lightbulb Gene Ontology all descendants SQL (or other solutions)

Dear GO SQL Experts,

I would like to create a GO annotation text file which contains the set of genes connected to each GOids and its all descendants (children, grandchildren, etc.).

Can...
Forum: Bioinformatics 04-03-2013, 06:28 AM
Replies: 24
Views: 4,164
Posted By eszter.ari
Try to run HTSeq without the header of the SAM...

Try to run HTSeq without the header of the SAM file.
Forum: RNA Sequencing 02-20-2013, 08:57 AM
Replies: 1
Views: 2,755
Posted By eszter.ari
edgeR choose the best model of GLM

Hi,
I have RNS-Seq count data by genes, 4 treatment groups (each with 2 biological replicates) and two factors (E: C or H, and A: 13 or 25). And I applied the GLM model of edgeR with these designs:...
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