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Forum: RNA Sequencing

04-24-2014, 04:56 AM

Replies: 3

ReCOG - Read Counter accounting for Overlapping Genes

Views: 2,770

Posted By eszter.ari

Dear David, Thanks for your remarks and...

Dear David,

Thanks for your remarks and questions. We will improve the description of the ReCOG script!

You are absolutely right!

Forum: Bioinformatics

04-11-2014, 05:35 AM

Replies: 5

Raw read count for RN-seq

Views: 2,526

Posted By eszter.ari

Take a look at our read counter tool:...

Take a look at our read counter tool: http://seqanswers.com/forums/showthread.php?p=134850
https://code.google.com/p/recog/

Forum: Bioinformatics

04-11-2014, 05:34 AM

Replies: 3

Raw read count to reference genes

Views: 1,692

Posted By eszter.ari

Take a look at our read counter tool:...

Take a look at our read counter tool: http://seqanswers.com/forums/showthread.php?p=134850
https://code.google.com/p/recog/

Forum: Bioinformatics

04-11-2014, 01:18 AM

Replies: 3

reads mapping to overlapping genes?

Views: 2,086

Posted By eszter.ari

Take a look at our read counter tool that does...

Take a look at our read counter tool that does not count read-pairs mapped to the same-strand overlapping part of genes: http://seqanswers.com/forums/showthread.php?p=134850...

Forum: Bioinformatics

04-11-2014, 01:17 AM

Replies: 2

Removing overlapping genes from annotation for RNAseq read count

Views: 2,486

Posted By eszter.ari

Forum: Bioinformatics

08-14-2013, 02:20 AM

Replies: 0

Gene Ontology all descendants SQL (or other solutions)

Views: 841

Posted By eszter.ari

Gene Ontology all descendants SQL (or other solutions)

Dear GO SQL Experts,

I would like to create a GO annotation text file which contains the set of genes connected to each GOids and its all descendants (children, grandchildren, etc.).

Can...

Forum: Bioinformatics

04-03-2013, 06:28 AM

Replies: 24

HTseq help

Views: 4,164

Posted By eszter.ari

Try to run HTSeq without the header of the SAM...

Try to run HTSeq without the header of the SAM file.

Forum: RNA Sequencing

02-20-2013, 08:57 AM

Replies: 1

edgeR choose the best model of GLM

Views: 2,755

Posted By eszter.ari

edgeR choose the best model of GLM

Hi,
I have RNS-Seq count data by genes, 4 treatment groups (each with 2 biological replicates) and two factors (E: C or H, and A: 13 or 25). And I applied the GLM model of edgeR with these designs:...

Showing results 1 to 8 of 8

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