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Forum: Bioinformatics 02-14-2019, 11:45 PM
Replies: 32
Views: 19,237
Posted By tolot27
Thanks for pointing me into this direction....

Thanks for pointing me into this direction. Unfortunately, repair.sh did not produce well ordered files. Fortunately, bbsplitpairs.sh could be used instead of the reformat.sh/repair.sh combination...
Forum: Bioinformatics 02-13-2019, 11:14 PM
Replies: 32
Views: 19,237
Posted By tolot27
deinterleave with singletons

Hi!

I have a interleaved fastq containing unmapped reads produced by segemehl -u. I want to deinterleave it into the two mate pair files as well as removing/saving the singletons into a separate...
Forum: Pacific Biosciences 11-21-2014, 02:20 AM
Replies: 2
Views: 1,235
Posted By tolot27
recreate metadata.xml

Hi!

Is there any way to reconstruct the metadata.xml?

Many attributes are stored inside the bax.h5, i. e. at ScanData/RunInfo, but not the adapter sequence.

Background: I got some SMRTCell...
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