Forum: General
09-11-2019, 05:52 AM
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Replies: 2
Views: 3,703
cross-posted in...
cross-posted in https://www.reddit.com/r/Python/comments/d2ad6l/does_anyone_know_how_to_solve_these_issues/ :rolleyes:
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Forum: Pacific Biosciences
08-29-2019, 05:36 AM
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Replies: 4
Views: 3,150
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Forum: Bioinformatics
08-29-2019, 05:30 AM
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Replies: 21
Views: 10,910
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Forum: Bioinformatics
07-30-2019, 06:35 AM
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Replies: 1
Views: 1,572
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Forum: RNA Sequencing
04-04-2019, 10:17 PM
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Replies: 4
Views: 2,497
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Forum: Illumina/Solexa
12-05-2018, 05:35 AM
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Replies: 2
Views: 2,267
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Forum: Oxford Nanopore
12-05-2018, 05:29 AM
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Replies: 6
Views: 7,232
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Forum: General
10-23-2018, 05:55 AM
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Replies: 0
Views: 1,551
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Forum: General
02-15-2018, 05:47 AM
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Replies: 0
Views: 1,774
Bgiseq-500
The only info available for BGISEQ-500 can be found here,
http://www.seq500.com/en/
Has anyone any insights, numbers, release date or something that can shed a bit more light on that machine?
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Forum: Pacific Biosciences
09-07-2017, 07:49 AM
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Replies: 17
Views: 12,276
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Forum: Pacific Biosciences
09-07-2017, 06:33 AM
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Replies: 17
Views: 12,276
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Forum: Pacific Biosciences
09-07-2017, 06:17 AM
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Replies: 17
Views: 12,276
Which BAM are you reading? "subreads"? PacBio...
Which BAM are you reading? "subreads"? PacBio stated back in february:
"The subread-bam/fastq files do not have quality values associated to the bases. In fact none of our SMRT Analysis tools use...
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Forum: Pacific Biosciences
09-07-2017, 03:58 AM
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Replies: 17
Views: 12,276
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Forum: Bioinformatics
06-14-2017, 03:48 AM
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Replies: 0
Views: 776
UCSC Genome Browser Alternative?
Hi Folks,
for some reasons we'd like to get rid of UCSC GB and use some other software to (locally) provide mammalian-sized genome data and annotation for remote access via web browser or other...
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Forum: Bioinformatics
06-02-2017, 05:27 AM
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Replies: 7
Views: 4,235
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Forum: Bioinformatics
06-01-2017, 10:58 PM
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Replies: 7
Views: 4,235
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Forum: Bioinformatics
05-30-2017, 11:31 PM
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Replies: 7
Views: 4,235
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Forum: Bioinformatics
12-14-2016, 12:11 PM
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Replies: 109
Views: 37,245
Interesting tool. Though I'd wish it could deal...
Interesting tool. Though I'd wish it could deal with "twin files", as these are the initial "raw files" of Illumina's bcl2fastq output. Additionally many tools require the pairs to be separated ......
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Forum: De novo discovery
12-14-2016, 11:57 AM
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Replies: 3
Views: 7,813
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Forum: Pacific Biosciences
11-16-2016, 01:06 AM
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Replies: 21
Views: 7,279
Have a look at...
Have a look at https://downloads.pacbcloud.com/public/SequelData/ArabidopsisDemoData/
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Forum: Illumina/Solexa
09-16-2016, 02:21 AM
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Replies: 9
Views: 3,139
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Forum: Illumina/Solexa
09-15-2016, 11:29 PM
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Replies: 9
Views: 3,139
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Forum: Illumina/Solexa
09-15-2016, 12:16 AM
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Replies: 9
Views: 3,139
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Forum: Illumina/Solexa
09-14-2016, 04:36 AM
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Replies: 9
Views: 3,139
HiSeq 4000 : typical RAW data output in GBytes
Hi,
can someone provide some info on how much raw data (in terms of GBytes, not Gbases) is generated for some typical HiSeq 4000 WGS runs (150,75, whatever)? How much fastq data (GBytes) is...
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Forum: Bioinformatics
08-29-2016, 01:50 AM
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Replies: 36
Views: 5,583
Hallo again ;-)
we are now with Isaac3. Cool...
Hallo again ;-)
we are now with Isaac3. Cool .. ;-)
Creating indices for grch38 and grcm38 leaves some open questions:
I have run index creation as follows (mask-width 0 is the default, I...
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