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Forum: Bioinformatics 04-07-2016, 03:56 AM
Replies: 16
Views: 5,298
Posted By nlapalu
Hi, Did you try to test an index like...

Hi,

Did you try to test an index like described :

--known-splicesite-infile <path>



With this mode, you can provide a list of known splice sites, which HISAT2 makes use of to align reads...
Forum: General 03-31-2016, 07:21 AM
Replies: 0
Views: 957
Posted By nlapalu
NCBI .sqn fromat

Hi Everybody,

Does anyone have a script to convert NCBI .sqn file format to the Genbank format ? It looks like a JSON file.
Thanks for your reply.
nico
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