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Search: Posts Made By: delinquentme
Forum: Bioinformatics 01-25-2012, 10:03 AM
Replies: 2
Views: 2,386
Posted By delinquentme
hey there peter So yeah it seems pretty...

hey there peter

So yeah it seems pretty counter intuitive that there aren't a number of resources to find these files... Any specific reason for this?

I was expecting there to be as many...
Forum: Bioinformatics 01-23-2012, 08:32 PM
Replies: 2
Views: 2,386
Posted By delinquentme
looking for .GFF / . GFF3 file repositories

I'm doing some bug testing for BioPython! So far I've managed to find modEncode which is pretty awesome...

But I'd love to find a few others API or not doesnt matter!
Forum: Ion Torrent 12-09-2011, 12:34 PM
Replies: 7
Views: 2,909
Posted By delinquentme
so im lost right now is low-cycle PCR ==...

so im lost right now is low-cycle PCR == emulsion PCR?

Im 90% sure that the sequencer needs consensus sequences so it requires amplification .. but I was hoping I could get some specific PGM...
Forum: Ion Torrent 12-09-2011, 10:16 AM
Replies: 7
Views: 2,909
Posted By delinquentme
yeahh I think the PGM needs really specific...

yeahh I think the PGM needs really specific lengths too?
Forum: Ion Torrent 12-09-2011, 09:44 AM
Replies: 7
Views: 2,909
Posted By delinquentme
so lets break this down into steps 1) ...

so lets break this down into steps

1) Nextera. DNA
This kit (http://www.illumina.com/support/sequencing/sequencing_kits/nextera_dna_sample_prep_kit.ilmn) ? It mentions Illumina .. does it work...
Forum: Ion Torrent 12-03-2011, 07:08 PM
Replies: 7
Views: 2,909
Posted By delinquentme
life sciences prep challenge -- thoughts?

So I've been checking out the life sciences grand challenge : speed

( specifically this challenge is to reduce the prep time involved in the DNA of these machines from 10 to 4 hours )

I'm...
Forum: Bioinformatics 11-23-2011, 06:11 AM
Replies: 6
Views: 2,607
Posted By delinquentme
Paul: ...

Paul:

http://www.sciencedirect.com/science/article/pii/S0264410X11012990
^ Im posting this guy to reddit :D

Jun:
Might I ask how you came upon that fact? Where can I read more about it?
Forum: Bioinformatics 11-23-2011, 05:58 AM
Replies: 6
Views: 2,607
Posted By delinquentme
I'm ok with shameless! sounds .... amazingly...

I'm ok with shameless!

sounds .... amazingly spot on... !

if( published? )
" where can I find one? "
else
" WHEN!? "
end
Forum: Bioinformatics 11-22-2011, 02:27 PM
Replies: 6
Views: 2,607
Posted By delinquentme
stanford's machine learning applied in bioinformatics

2 questions:

1) Anyone on this forum also taking the ml-class offered?
2) Specific examples of machine learning used in bioinformatics

So I'm about half way through the class and I started...
Forum: Bioinformatics 08-16-2011, 04:43 AM
Replies: 0
Views: 2,258
Posted By delinquentme
Stanford open bioinformatics course

Stanford taught course...ranked against stanford students!

If anyone is interested in coopping on this...I've started using #StanfordOpenBioinformatics

Theyre offering three public courses:...
Forum: Bioinformatics 07-04-2011, 09:54 PM
Replies: 1
Views: 1,652
Posted By delinquentme
another addition

how about genome browsers

i havnt looked into this too much ..

i know DNAnexus has a product that i've looked through a bit which was a bit of an eye-sore ...

what are some of the more...
Forum: Bioinformatics 07-04-2011, 03:54 PM
Replies: 1
Views: 1,652
Posted By delinquentme
[ sequence alignments, big data, bio informatics ] x [ programming and UI design ]

TLDR version:
I'm good with ruby, and web applications as well as User Interface design... I'm DEEPLY interested in working in this big data/ sequencing and genomics field... what should i do?

...
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