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Search: Posts Made By: hosang.jeon
Forum: Bioinformatics 06-03-2013, 04:47 PM
Replies: 4
Views: 2,112
Posted By hosang.jeon
Thank you swbarnes2. However, the converter...

Thank you swbarnes2.

However, the converter you let me know only can handle bed format data.
I need to convert the data of vcf format.

Even though I can convert my vcf file to bed format, it...
Forum: Bioinformatics 06-03-2013, 04:46 PM
Replies: 4
Views: 2,112
Posted By hosang.jeon
Thank you swbarnes2. However, the converter...

Thank you swbarnes2.

However, the converter you let me know only can handle bed format data.
I need to convert the data of vcf format.

Even though I can convert my vcf file to bed format, it...
Forum: Bioinformatics 06-03-2013, 06:55 AM
Replies: 4
Views: 2,112
Posted By hosang.jeon
Post How to convert to or get 1000 Genomes phase1 data mapped to hg18.

Hello.

I'm trying to annotate my variant data with 1000 genomes phase1 data.
(ALL.wgs.phase1_release_v3.20101123.snps_indels_sv.sites.vcf)

I need to convert above vcf file to hg18 and hg19(I...
Forum: Bioinformatics 07-12-2012, 04:50 PM
Replies: 0
Views: 940
Posted By hosang.jeon
What is the meaning of "moved end" in BWA pairing process.

Hi all.

I'm using BWA to align paired-end reads.
Trying to understand the adjustment process of mapping quality calculation, I could not understand the meaning of "moved end".

In the pairing...
Forum: Bioinformatics 01-17-2012, 04:02 PM
Replies: 1
Views: 1,833
Posted By hosang.jeon
Question SOAP2 (SOAPaligner) -v option

Our team use SOAP2 to align our read data (human sample).



During the processing situation, I found that -v option value has no effect to the result & execution time of alignment.

Here...
Forum: Bioinformatics 01-17-2012, 04:00 PM
Replies: 2
Views: 1,965
Posted By hosang.jeon
It looks like the path which contains maq2sam...

It looks like the path which contains maq2sam command is not in your $PATH.
As you can use samtools, the path where the samtools execution file is located is in your $PATH, but the maq2sam execution...
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