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Forum: Bioinformatics 09-12-2014, 01:48 AM
Replies: 1
Views: 1,655
Posted By thek71
OncodriveFM input files

Dear all,

I was thinking of using OncodriveFM for identification of driver genes, but I was unable to create the input files needed. In the example files the CLL.tdm file has the SIFT, PolyPhen2...
Forum: Bioinformatics 08-27-2014, 04:57 AM
Replies: 4
Views: 5,832
Posted By thek71
Hi all, I have a similar question regarding the...

Hi all,
I have a similar question regarding the germline mutations. I have several tumor-normal samples for which I have used the somatic command and I want to check several genes for germline...
Forum: RNA Sequencing 03-30-2011, 06:20 AM
Replies: 5
Views: 3,469
Posted By thek71
The file unspliced_mapped_segments.sort does not...

The file unspliced_mapped_segments.sort does not exist, but the others are there and are not empty.
I have attached the configuration file.
Forum: RNA Sequencing 03-30-2011, 04:06 AM
Replies: 5
Views: 3,469
Posted By thek71
MapSplice error: open reads file

Hi all,
I am currently trying to use MapSplice and compare it with Tophat and SpliceMap. My reads are 60bp long single end in fasta format. When I try to run it I get the following:

bin...
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