Forum: Literature Watch
03-02-2010, 04:22 AM
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Replies: 1
Views: 1,672
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Forum: Introductions
01-14-2010, 12:10 PM
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Replies: 33
Views: 9,291
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Forum: Bioinformatics
01-14-2010, 09:55 AM
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Replies: 1
Views: 2,406
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Forum: Bioinformatics
01-14-2010, 08:04 AM
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Replies: 292
Views: 161,533
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Forum: Bioinformatics
10-29-2009, 02:30 AM
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Replies: 1
Views: 1,754
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Forum: Sample Prep / Library Generation
10-08-2009, 01:12 AM
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Replies: 4
Views: 14,497
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Forum: Bioinformatics
10-06-2009, 12:49 PM
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Replies: 3
Views: 8,004
From...
From http://www.broadinstitute.org/igv/doc/fileformats_TEXT.htm
IGV File Format
An IGV file (.igv) is a tab-delimited text file that defines tracks. The first row contains column headings for...
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Forum: Illumina/Solexa
10-06-2009, 06:45 AM
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Replies: 18
Views: 15,038
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Forum: Bioinformatics
10-02-2009, 04:37 AM
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Replies: 292
Views: 161,533
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Forum: Bioinformatics
10-01-2009, 03:09 AM
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Replies: 292
Views: 161,533
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Forum: Bioinformatics
09-24-2009, 12:05 PM
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Replies: 292
Views: 161,533
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Forum: Bioinformatics
09-23-2009, 09:05 AM
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Replies: 3
Views: 8,004
I was struggling a bit while displaying big...
I was struggling a bit while displaying big tracks in UCSC Gbrowser. I found a better option to use the IGV genome browser than working remotely. I'd suggest the community to have a look on it.
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Forum: General
09-23-2009, 09:00 AM
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Replies: 30
Views: 14,846
Can someone please help me understand the...
Can someone please help me understand the parameters of wgsim. I am struggling to understand how changing the standard deviation [-s paramater; default value = 50] and the "outer distance between the...
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Forum: Epigenetics
09-16-2009, 03:18 AM
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Replies: 4
Views: 8,674
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Forum: Epigenetics
08-30-2009, 10:06 AM
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Replies: 4
Views: 8,674
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Forum: Epigenetics
08-28-2009, 10:45 AM
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Replies: 1
Views: 2,499
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Forum: General
08-28-2009, 07:47 AM
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Replies: 8
Views: 8,217
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Forum: Literature Watch
08-28-2009, 07:45 AM
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Replies: 0
Views: 1,575
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Forum: General
08-26-2009, 08:47 AM
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Replies: 8
Views: 8,217
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Forum: Illumina/Solexa
08-25-2009, 09:18 AM
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Replies: 18
Views: 6,183
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Forum: Illumina/Solexa
08-25-2009, 07:58 AM
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Replies: 18
Views: 6,183
Do you think that there may be some non-random...
Do you think that there may be some non-random distribution of how RNA breaks in any sample determined by secondary structure? In other words, can you find any correlation between you bias that may...
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Forum: General
08-25-2009, 03:32 AM
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Replies: 8
Views: 8,217
Mapability or "why my mapping is biased?"
I found this track a very important piece of information to have in mind while mapping reads to the human genome. To be honest I have not found it discussed that much out there (I may be wrong :p). I...
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Forum: Illumina/Solexa
08-25-2009, 03:28 AM
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Replies: 18
Views: 6,183
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Forum: Bioinformatics
08-01-2009, 12:25 PM
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Replies: 7
Views: 6,024
As wikipedia's article...
As wikipedia's article (http://en.wikipedia.org/wiki/FASTQ_format#NCBI_Short_Read_Archive) states, SRA files are already in Sanger's qualities. You should only remove the spaces. Please tell me if I...
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Forum: Bioinformatics
08-01-2009, 11:07 AM
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Replies: 3
Views: 3,501
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