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Forum: Bioinformatics 04-19-2017, 01:15 PM
Replies: 1
Views: 823
Posted By quantic
What does 'top=?' mean in a FASTA header?

I pipeline I am working with has a step which says:

echo "Rename OTU sequences. All OTU with 'top=?' regarded as 'Other'"

And then calls a python script that filters all sequences from a FASTA...
Forum: Bioinformatics 03-20-2017, 07:57 AM
Replies: 0
Views: 662
Posted By quantic
Issue with mpileup

Hey y'all, I am encountering an issue while using mpileup to construct a consensus sequences from bam alignments. I had left the program to execute over the weekend but it was seemingly stuck on the...
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