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16s alignment assembly atac-seq bam bash bbduk bbmap bbtools bcl2fastq bioconductor bioinfomatics bioinformactics bioinformatics bowtie bowtie2 bwa cancer chip-seq coverage cuffdiff cufflinks deseq2 error fasta fastq gatk genome genome assembly genomics illumina index introduction library preparation linux machine learning mapping metagenomics methylation microbiome minion miseq nanopore nextera nextseq ngs pacbio precisionfda python qiagen quality control rna rna-seq rnaseq samtools sequencing single cell single cell rna seq smrt analysis snp snp analysis software spades tophat truseq unix vcf velvet wgs workshop

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