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Forum: Bioinformatics

03-09-2015, 08:22 AM

Replies: 78

Gap5 1.2.0 release (assembly viewer & editor)

Views: 45,710

Posted By aimc

Hi again and thanks for your quick response ! ...

Hi again and thanks for your quick response !

As you said it should work, i tried again with no luck.
I tried a second time with sudo bash, so executing gap5 with super user permissions; this...

Forum: Bioinformatics

03-09-2015, 07:26 AM

Replies: 78

Gap5 1.2.0 release (assembly viewer & editor)

Views: 45,710

Posted By aimc

Hello. I am running gap5 ( staden-2.0.0b9.i686...

Hello.
I am running gap5 ( staden-2.0.0b9.i686 ) . I created an g5d and g5x with tg_index

But when i run gap5, i cannot map reads to the sequences.
The graphical user interface won't let me...

Forum: Bioinformatics

01-12-2015, 10:22 AM

Replies: 0

SPAdes trusted contigs

Views: 1,860

Posted By aimc

SPAdes trusted contigs

Hello.
I have a question regarding trusted contigs in SPAdes:

does it have any sense to feed the program its own contigs.fasta, in a second run?

Greetings !

Forum: Bioinformatics

11-12-2014, 05:25 AM

Replies: 0

SNP with contigs

Views: 717

Posted By aimc

SNP with contigs

Hello,
i wanted to ask if any one tried detecting SNP by blasting genes to contigs, and by the nature of the hits determine which snp is present and which is not.

The general idea is to detect...

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