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Forum: Academic/Non-Profit Jobs 02-24-2016, 12:40 PM
Replies: 0
Views: 1,266
Posted By wuj
Postdoctoral Fellow position in Computational Biology and Bioinformatics

We are seeking for a highly motivated postdoctoral fellow, who has good programming skills and extensive genomics/epigeneomics data analysis experience, to study transcriptional regulation networks...
Forum: RNA Sequencing 06-28-2012, 11:07 AM
Replies: 1
Views: 1,356
Posted By wuj
Please email the author, I think he will be glad...

Please email the author, I think he will be glad to help you.
Forum: Bioinformatics 04-21-2011, 07:58 AM
Replies: 4
Views: 3,784
Posted By wuj
I assume they are using old versions of these...

I assume they are using old versions of these softwares....check if there are big changes in cufflinks/cuffdiff/tophat
Forum: Bioinformatics 04-19-2011, 11:57 AM
Replies: 5
Views: 1,996
Posted By wuj
You need to get bowtie first, and....perhaps you...

You need to get bowtie first, and....perhaps you need to read manuals of bowtie and tophat before you actually start....

FYI: reference genome sequences are available on UCSC genome browser ->...
Forum: Bioinformatics 04-16-2011, 04:40 PM
Replies: 1
Views: 2,614
Posted By wuj
I think they were using the old version of...

I think they were using the old version of Cufflinks, cuffcompare cuffdiff etc....are you trying the version when the paper was published?
Forum: Bioinformatics 10-29-2010, 12:21 PM
Replies: 0
Views: 2,436
Posted By wuj
SMRT pipeline

I just noticed PacBio has updated their pipeline, called SMRT. http://www.pacbiodevnet.com/Algorithms

Did anyone try the pipe?
Forum: Bioinformatics 09-09-2010, 06:21 AM
Replies: 1
Views: 1,342
Posted By wuj
up ................

up ................
Forum: Bioinformatics 09-07-2010, 11:45 AM
Replies: 1
Views: 1,342
Posted By wuj
Question Scripture score function

Hi, Everyone,

I am trying to use Scripture to do transcript abundance estimation, like Cufflinks does. I found there is a score function in the guide, so I simply use it with a transcription...
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