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Forum: Bioinformatics 05-03-2010, 12:36 AM
Replies: 18
Views: 11,849
Posted By saha
dear all, i am facing similar problem. i am...

dear all,

i am facing similar problem. i am very much in need of tigr rice genome v6.0 but not able to get it yet. i want to utilize this gtf file as refgene list to upload on broad institute's...
Forum: Genomic Resequencing 04-30-2010, 03:58 AM
Replies: 0
Views: 3,230
Posted By saha
tigr rice genome v6.0

Dear all,

i am searching for tigr rice genome v6.0 refgenelist which i can import on IGV browser. It would be a great help if somebody can help me in getting this gtf file for the same.

thanks...
Forum: SOLiD 04-15-2010, 08:46 PM
Replies: 1
Views: 2,346
Posted By saha
Mapping to SOLiD reads to draft genome

I am presently involved in hybrid assembly and want to map my SOLiD reads against ROCHE contigs (length more than 1000bp). I approach is to map the reads with corona_lite, but facing problem with the...
Forum: RNA Sequencing 03-03-2010, 10:31 PM
Replies: 0
Views: 2,173
Posted By saha
problem in using ERANGE

hello everyone,

I am working on SOLiD platform and want to use SOLiD data for RNAseq analysis. For that i am trying to utilize bowtie for mapping an ERANGE for RPKM. For bowtie mapping we need...
Forum: Introductions 03-03-2010, 10:17 PM
Replies: 373
Views: 179,891
Posted By saha
hello i am Saurav. I am a newbie to seqanswers. i...

hello i am Saurav. I am a newbie to seqanswers. i was just searching for where to start and found this page. i am basically working on applied biosystem's SOLiD platform. I am new to high throughput...
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