Forum: Bioinformatics
08-04-2014, 07:14 AM
|
|
Replies: 0
Views: 1,143
Predicting promoter sites from NGS experiments
Hi,
is it possible to predict promoter sites from NGS experiments? Given a set of RNAseq experiments (human, triplicates) of several biological conditions (3) can I predict a regulation network...
|
|
Forum: Bioinformatics
04-14-2011, 04:56 AM
|
|
Replies: 3
Views: 2,681
One example on the memory:
I am currently...
One example on the memory:
I am currently running 6 nodes for reading BAM files in parallel, each table consists of some 300 M rows. The memory footprint is about 5 GB though I allocated 16 GB on a...
|
|
Forum: Bioinformatics
04-13-2011, 09:44 PM
|
|
Replies: 3
Views: 2,681
|
|
Forum: Bioinformatics
04-12-2011, 06:53 AM
|
|
Replies: 3
Views: 2,681
NGS functionality for KNIME
Hi,
I am very excited that I can share now with you my nodes and workflows that I created for NGS data analysis in KNIME.
KNIME is a workflow management system. Some of its features include:
...
|
|
Forum: RNA Sequencing
03-25-2011, 12:18 PM
|
|
Replies: 1
Views: 1,435
|
|
Forum: RNA Sequencing
03-25-2011, 11:18 AM
|
|
Replies: 1
Views: 1,435
hmmSplicer problem with initialHMM.txt
Hi,
I am trying to run hmmSplicer and I get the following error message:
IOError: [Errno 2] No such file or directory: 'initialHMM.txt'
Does anyone know what this means?
I haven't...
|
|
Forum: Academic/Non-Profit Jobs
01-19-2011, 10:36 PM
|
|
Replies: 0
Views: 3,239
Post-doctoral position (Paris, France)
Post-doctoral position in bioinformatics: next-generation sequencing (NGS) analysis for the study of host-viral interaction in dengue infection, Institut Pasteur, Paris, FRANCE.
The objective is...
|
|
Forum: Bioinformatics
01-17-2011, 04:34 AM
|
|
Replies: 8
Views: 3,796
Hi,
I would be interested in how you actually...
Hi,
I would be interested in how you actually compared the different algorithms?
You say you used an existing data set... Why don't you use a constructed one? and how do you know what is true or...
|
|
Forum: Bioinformatics
08-26-2009, 04:57 AM
|
|
Replies: 48
Views: 20,520
|
|
Forum: Bioinformatics
04-16-2009, 05:50 AM
|
|
Replies: 13
Views: 16,610
|
|
Forum: Bioinformatics
04-15-2009, 05:47 AM
|
|
Replies: 0
Views: 1,695
swift related question
Hi,
I am working on NGS/Solexa data analysis. I am currently experimenting with swift for the image analysis, having some very encouraging results.
I am looking for a way to view/extract the...
|
|
Forum: Bioinformatics
02-24-2009, 12:25 AM
|
|
Replies: 2
Views: 1,904
|
|
Forum: Bioinformatics
02-23-2009, 02:17 AM
|
|
Replies: 24
Views: 20,314
conversion table for solexa and Phred
I found this table useful it contains both scores for solexa and phred...
http://www.genographia.org/portal/topics/reports/qualitysheet.pdf/at_download/file
It is in PDF fromat...
|
|
Forum: Bioinformatics
02-23-2009, 01:12 AM
|
|
Replies: 2
Views: 1,904
|
|
Forum: Introductions
02-22-2009, 11:23 PM
|
|
Replies: 0
Views: 1,368
New @ the Pasteur Institute new to NGS
Hi,
my name is Bernd and I am just in the process of moving from New York (what a wonderful city) to Paris (I haven't quite yet made up my mind on which one is more wonderful a city). I started...
|
