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Forum: Bioinformatics 10-30-2011, 05:32 PM
Replies: 1
Views: 4,764
Posted By yhong
Question abbout CNVnator output

I am using CNVnator for CNV detection.
I understand the following output after CNV calling:
duplication chr1:102641001-102644000 3000 1.70069 0.025451 16526.9

Using this CNV...
Forum: Bioinformatics 09-23-2011, 12:03 AM
Replies: 0
Views: 2,173
Posted By yhong
ART simulator for SNP detection benchmarking

I am trying to simulate NGS illumina read data using ART simulator that was used for 1000 genome projects. (http://www.niehs.nih.gov/research/resources/software/art/index.cfm)
It works great for...
Forum: General 08-22-2011, 04:57 PM
Replies: 1
Views: 1,774
Posted By yhong
first read in a pair means F3 or R3?

I am trying to extract unmapped reads afte resequencing SOLiD mate-pair reads.
This is what I know so far..

The command "samtools view -f 0x0048", gives me a list of reads whose pairs are...
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