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Forum: Bioinformatics 02-15-2016, 05:18 AM
Replies: 0
Views: 1,810
Posted By slumpy42
SRA Metadata File - Sample Submission

Hi, I'm trying to submit WGS samples to SRA using the SRA Submissions Portal.

I'm stuck at the SRA metadata step of Biosample submission. There is a spreadsheet to fill in, which I have done, I...
Forum: Bioinformatics 10-17-2015, 06:48 AM
Replies: 4
Views: 3,033
Posted By slumpy42
Thanks for all your replies and suggestions. ...

Thanks for all your replies and suggestions.

I am going through the PacBio training webinars and they mention that deletions are the most common form of error in the circular consensus reads, but...
Forum: Bioinformatics 10-12-2015, 06:31 AM
Replies: 4
Views: 3,033
Posted By slumpy42
In-dels Illumina vs. PacBio

Hello,

I have a PacBio-generated closed complete bacteria genome. I am aligning Illumina reads of the same strain to it using breseq, a pipeline which uses bowtie2 for read mapping.

The...
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