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Forum: Ion Torrent 07-11-2012, 06:05 AM
Replies: 10
Views: 10,863
Posted By slm1816
Little experience with both cancer panels


I have run the Ion Torrent AmpliSeq Panel and the Illumina TruSeq Panel.

Starting with the Illumina TruSeq Panel:
-Much easier setup. The machine might run longer but the ease of setup...
Forum: Ion Torrent 07-10-2012, 11:40 AM
Replies: 5
Views: 5,140
Posted By slm1816
Ion Torrent Initialization Problems

Hey all,

Anyone have any tips on initializing PGM? We seem to have initialization fail frequently for one reason or another. It is never the same issue. Sometimes it asks us to...
Forum: General 07-09-2012, 01:16 PM
Replies: 0
Views: 849
Posted By slm1816
Cancer Panels

Anyone in the community utilizing the Illumina TruSeq Cancer Panel or the Ion Torrent AmpliSeq Cancer Panel? What's your experience been with analyzing all the data?
Forum: Ion Torrent 07-09-2012, 01:12 PM
Replies: 1
Views: 1,311
Posted By slm1816
Software that catches indels

Hey all,

Does anyone know of a software that is very good at picking up indels?

Forum: Ion Torrent 07-09-2012, 01:11 PM
Replies: 27
Views: 15,526
Posted By slm1816
I am also curious about the CLC software....I'm...

I am also curious about the CLC software....I'm not exactly sure in how to use it.
Forum: Bioinformatics 07-09-2012, 01:08 PM
Replies: 2
Views: 893
Posted By slm1816
Seeking NGS file definitions

Hey all,
I am new to NGS and work on a Illumina MiSeq and an Ion torrent PGM. I really just need a vocabulary lesson on all the different kinds of files made from NGS systems such as SFF, FastQ,...
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