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Forum: Bioinformatics 12-03-2018, 06:51 AM
Replies: 0
Views: 237
Posted By weehzer
Question MLST: BAPS VS eburst

Hello,
I don't completely understand the difference in analyzing MLST data using BAPS ( Bayesian Analysis of genetic Population Structure ) and eBURST.
In both cases you end up with a subdivision...
Forum: Genomic Resequencing 09-10-2018, 04:49 AM
Replies: 0
Views: 2,500
Posted By weehzer
Question SNP calling on samples sequenced with different technology

Hi,
is it possible to compare SNPs from alignments of different samples, whereas the samples weren't sequenced on the same illumina platform?
Let's say some were sequenced with HiSeq 2x100, some...
Forum: Pacific Biosciences 04-05-2017, 12:26 AM
Replies: 4
Views: 1,479
Posted By weehzer
The latest version should be fine. So you are...

The latest version should be fine. So you are running it on Ubuntu 14.04?
Have you ever tried 16.04?
Thanks a lot for you reply!
Forum: Pacific Biosciences 03-31-2017, 02:32 AM
Replies: 4
Views: 1,479
Posted By weehzer
Question SMRT Tools Ubuntu 12.04 required?

In short: Is anyone running SMRT Tools on Ubuntu 14.04 or higher?

My longer question:
We're planning to use SMRT tools. What surprises me are the system requirements listing Ubuntu 12.04 and...
Forum: Illumina/Solexa 03-31-2017, 12:30 AM
Replies: 7
Views: 3,640
Posted By weehzer
Thanks a lot, very nice explanations!

Thanks a lot, very nice explanations!
Forum: Illumina/Solexa 03-30-2017, 08:35 AM
Replies: 7
Views: 3,640
Posted By weehzer
Question HiSeq vs MiSeq read-length and quality

Hi,
I have a very basic question.
Why is the read highest achievable read-length of MiSeq compared to HiSeq longer although, as far as I understand, they use the same chemistry?

Second question...
Forum: Bioinformatics 03-30-2017, 04:59 AM
Replies: 0
Views: 768
Posted By weehzer
Question SMRT Tools, Parsnp, CLG GWB - NGS Tools System requirements

Hi,
I am pretty new to the NGS field and I am configuring a workstation at the moment.

I'd like to use parsnp and CLC Genomics Workbench. The workstation is a backup for a HPC Cluster and will be...
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