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Forum: Bioinformatics 11-29-2012, 07:28 AM
Replies: 0
Views: 1,037
Posted By florian
Lightbulb GeneProf Web Services

Hi folks,

we've just launched a range of new RESTful web services for retrieving and analysing data from the GeneProf databases (http://www.geneprof.org). GeneProf is a web-based tool for the...
Forum: Bioinformatics 01-30-2012, 02:21 AM
Replies: 0
Views: 3,065
Posted By florian
Arrow GeneProf - Next-Gen Analysis for Next-Gen Data

Hi all,

I'm delighted to announce the release of GeneProf, a new data analysis suite for high-throughput sequencing data from RNA-seq and ChIP-seq experiments. GeneProf aims to simplify common...
Forum: Bioinformatics 05-01-2009, 03:59 AM
Replies: 2
Views: 2,218
Posted By florian
hey, you might wqant to try the "edgeR"...

hey,

you might wqant to try the "edgeR" bioconductor package.

http://www.bioconductor.org/packages/bioc/html/edgeR.html

works well for me...

cheers, florian
Forum: Bioinformatics 01-13-2009, 09:09 AM
Replies: 514
Views: 210,964
Posted By florian
hi zee sorry, if i gave you the wrong...

hi zee

sorry, if i gave you the wrong impression, but i'm actually not a developer of bowtie. i cannot claim any of this fame -- unfortunately :-D.
as to the question, i'll better leave the...
Forum: Bioinformatics 01-07-2009, 08:53 AM
Replies: 514
Views: 210,964
Posted By florian
Yeh, I agree. However, there seems to be a...

Yeh, I agree. However, there seems to be a problem with multi-threading, so be advised NOT to use the -p option in conjunction with it. Ben (the main developer) has told me he was already working on...
Forum: Bioinformatics 01-07-2009, 08:42 AM
Replies: 514
Views: 210,964
Posted By florian
hi there as of version 0.9.8 bowtie comes...

hi there

as of version 0.9.8 bowtie comes with the --unfa <filename> / --unfq <filename> options, which should be doing exactly what you are looking for
...
Forum: RNA Sequencing 12-12-2008, 03:49 AM
Replies: 25
Views: 11,940
Posted By florian
was struggling with getting it to run recently as...

was struggling with getting it to run recently as well, but i think i finally got it running now. at which part of the installation do you get stuck?
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