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Forum: Bioinformatics 04-28-2011, 02:52 AM
Replies: 0
Views: 1,451
Posted By nturay
Exclamation A samtools v0.1.11 bug???

Hi all,

I've extracted one paired-end read from BWA aligned result and use samtools v0.1.11 to convert them to a BAM file as my test data set as below :

HWUSI-EAS1812:1:23:18626:4628#0 99 ...
Forum: Bioinformatics 02-09-2011, 05:12 PM
Replies: 0
Views: 1,191
Posted By nturay
Smile whether tophat can find interchromosomal hits when junctions are provided...

Hi all, I am using Tophat against human whole RNA sequences.
The tophat menu says it doesn't support interchromosomal junction search, but it supports GFF file for known junctions input.
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