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Forum: Bioinformatics 04-05-2013, 12:24 AM
Replies: 0
Views: 2,256
Posted By awalisa
How to extract SNP from MSA to create phylogenetic tree

Hello,

I used Mauve program to do multiple sequence alignment (MSA) of 43 whole genome sequence and then I got ~17,000 SNP from this. Now, I have the SNP position but I do not know how can I get...
Forum: Bioinformatics 02-23-2012, 09:01 PM
Replies: 0
Views: 1,239
Posted By awalisa
working in polyscan

Hello

I tried to use polyscan to analyse chromatogram file from sanger. However, I can not run polyscan. I prepared the input sample in phd and convert to ace with phred, phrap. After than I ran...
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