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Forum: Bioinformatics 04-02-2013, 05:37 AM
Replies: 11
Views: 4,742
Posted By kksiame
Spanner Compilation Error

Dear Chip,
I had trouble compiling Spanner. Find below details of the errors I got. I'm a bit of a novice and would appreciate any help from anyone.

In file included from MosaikAlignment.cpp:12:...
Forum: Bioinformatics 05-24-2012, 11:25 PM
Replies: 1
Views: 2,144
Posted By kksiame
We managed to present the same problem outlined...

We managed to present the same problem outlined by adippenaar to the the author of SMALT (Hannes Ponstingl). Here is the suggestion they gave:

> samtools calmd -bS <smalt_sam_output_file>...
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