Forum: Bioinformatics
07-19-2012, 12:24 AM
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Replies: 1
Views: 3,332
Perhaps a solution myself
# generate mpilup,...
Perhaps a solution myself
# generate mpilup, say with two bams
samtools mpileup -B a.bam b.bam > out.mpileup
# Then use awk to filter on the depth of coverage columns (i.e. $4 and $7 for two...
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Forum: Bioinformatics
07-18-2012, 05:39 AM
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Replies: 1
Views: 3,332
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Forum: Bioinformatics
07-18-2012, 05:14 AM
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Replies: 1
Views: 3,175
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Forum: Bioinformatics
07-06-2012, 01:15 AM
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Replies: 1
Views: 3,175
samtools view and mapq
I am working with paired end Illumina resequencing data from multiple populations.
My workflow involves samtools view -q to generate bamfiles with specific mapq score thresholds, samtools...
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Forum: Introductions
07-06-2012, 12:59 AM
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Replies: 0
Views: 806
Hello
Coming to visit from Sheffield, UK. Working with pooled, multi population resequencing data.
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