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Forum: Complete Genomics 11-30-2011, 08:15 AM
Replies: 2
Views: 5,329
Posted By scordes
The Complete Genomics variation or var file is...

The Complete Genomics variation or var file is one of the key results provided in a data package that is delivered as part of our sequencing service. The entire data package is generated from our...
Forum: Complete Genomics 11-10-2011, 10:09 AM
Replies: 3
Views: 2,483
Posted By scordes
Yes CGA Tools is announced on the Complete...

Yes CGA Tools is announced on the Complete Genomics website here:
http://www.completegenomics.com/sequence-data/cgatools/

You can download the software and documentation for CGA Tools here:...
Forum: Complete Genomics 09-09-2011, 08:09 AM
Replies: 3
Views: 2,483
Posted By scordes
Yes, evidence (i.e. reads and mappings that...

Yes, evidence (i.e. reads and mappings that support called variations) are stored in the EVIDENCE folder. You can see examples of what this looks like in the publicly released 69 genome data,...
Forum: General 08-22-2011, 01:59 PM
Replies: 2
Views: 1,330
Posted By scordes
Unfortunately Bowtie is not optimized for...

Unfortunately Bowtie is not optimized for Complete Genomics data. Specifically, Complete Genomics reads have sub-read gaps that Bowtie will interpret as mismatches. The high mismatch frequency will...
Forum: Complete Genomics 07-08-2011, 10:26 AM
Replies: 1
Views: 3,118
Posted By scordes
Announcing Complete Genomics Cancer Grant Program

As the use of DNA sequencing data in cancer research has become widespread, significant progress is being made with respect to characterization of a variety of cancers. As we learn more about the...
Forum: Introductions 07-01-2011, 11:19 AM
Replies: 4
Views: 2,499
Posted By scordes
The dbSNPAnnotated file is a standard deliverable...

The dbSNPAnnotated file is a standard deliverable that is included in the ASM folder for all genome assemblies.
Forum: Site Announcements 06-21-2011, 10:04 AM
Replies: 3
Views: 7,856
Posted By scordes
Thank you!

Thank you!
Forum: Site Announcements 06-21-2011, 07:49 AM
Replies: 3
Views: 7,856
Posted By scordes
Hi Would it be possible to include Complete...

Hi

Would it be possible to include Complete Genomics as an option in the list of "instruments" one selects when creating a user account?

While we don't sell our machines, there are definitely...
Forum: Introductions 06-21-2011, 07:42 AM
Replies: 0
Hi
Views: 605
Posted By scordes
Hi

Hi

I work at Complete Genomics in the Customer Support Department.

I'll be poking around the forums, trying to address any questions about our services.

Feel free to shoot me an email if...
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