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454 alignment assembly atac-seq bam bbduk bbmap bbtools bioanalyzer bioinfomatics bioinformactics bioinformatics blast bowtie bowtie2 bwa cancer chip-seq coverage cuffdiff cufflinks cuffmerge deseq deseq2 dna-seq edger epigenetics error fasta fastq fastqc ffpe fpkm gatk genome genomics hisat2 hiseq illumina index linux mapping metagenomics microbiome miseq nextera nextseq ngs normalization novaseq pacbio pipeline python qiagen rna rna-seq rnaseq rrbs sam samtools sequencing snp software tophat trimmomatic truseq vcf velvet wgs workshop

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