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Forum: Bioinformatics 10-28-2014, 08:19 AM
Replies: 4
Views: 1,441
Posted By benjaminversteeg
Thank you for your response. Sorry for the...

Thank you for your response. Sorry for the confusion, but with the sentence about the speed I meant that MegaBLAST is much faster. I also measured Mauve by the way.

Tested with two bacterial...
Forum: Bioinformatics 10-28-2014, 05:34 AM
Replies: 4
Views: 1,441
Posted By benjaminversteeg
MegaBLAST vs NUCmer

Hi,

For a project I'm trying to find out which pairwise aligner is best for aligning whole (bacterial) genomes.

Important aspects for choosing the best aligner are speed and sensitivity. In...
Forum: Bioinformatics 04-01-2014, 03:26 AM
Replies: 3
Views: 1,568
Posted By benjaminversteeg
Post NUCmer

Dear reader,

The Bioinformatics branch is well known for its high speed of development. The founding of NUCmer has been some while now (I believe somewhere around the 1999s) That's why I was...
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