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Forum: Bioinformatics 08-20-2021, 01:47 AM
Replies: 14
Views: 20,575
Posted By divon
Here's an alternative link:...

Here's an alternative link: https://genozip.readthedocs.io/sam2fq.html

Does this work?
Forum: Bioinformatics 08-20-2021, 01:12 AM
Replies: 14
Views: 20,575
Posted By divon
Hi Andrey, which file can't you open?

Hi Andrey, which file can't you open?
Forum: Ion Torrent 08-15-2021, 12:27 AM
Replies: 0
Views: 942
Posted By divon
Compression of Ion Torrent BAM files

I am happy to announce that my Genozip tool now has an optimization feature specifically for Ion Torrent BAM files: --optimize-ZM optimizes the ZM field (flow signal) as follows: negative Ion Torrent...
Forum: Bioinformatics 07-25-2021, 05:26 PM
Replies: 14
Views: 20,575
Posted By divon
For the sake of completeness, I will just mention...

For the sake of completeness, I will just mention that you can also achieve this with my Genozip program:

genozip file.bam <---- compresses the BAM file
genocat file.bam.genozip --output...
Forum: General 07-23-2021, 08:13 PM
Replies: 19
Views: 14,117
Posted By divon
Thanks Andrey for the question. A few points...

Thanks Andrey for the question. A few points where I think Genozip provides some benefits over CRAM:

1. Similar to CRAM, Genozip compresses each field of the SAM/BAM data separately, with the best...
Forum: Bioinformatics 07-22-2021, 06:04 AM
Replies: 0
Views: 1,005
Posted By divon
Thumbs up Introducing Genozip - genomic file compressor

I would like to introduce a compression software package I developed: Genozip (www.genozip.com (http://www.genozip.com)).

It is a tool with the primary objective of compressing and archiving...
Forum: Bioinformatics 07-22-2021, 05:56 AM
Replies: 5
Views: 5,073
Posted By divon
You might also want to try my program genozip...

You might also want to try my program genozip (http://genozip.com). It is usually compresses FASTQ 2x-5x better than gzip/pigz/xz/bzip2.
Forum: General 07-22-2021, 05:50 AM
Replies: 19
Views: 14,117
Posted By divon
You might want to try my program Genozip...

You might want to try my program Genozip (www.genozip.com (http://www.genozip.com)). It is often better than CRAM.
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