SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 6 of 6
Search took 0.00 seconds.
Search: Posts Made By: GUZUMO
Forum: Bioinformatics 10-02-2017, 06:44 PM
Replies: 3
Views: 438
Posted By GUZUMO
Thank you . But as idba_ud has a parameter...

Thank you .
But as idba_ud has a parameter '--min count' with description 'minimum multiplicity for filtering k-mer when building the graph', I guess maybe what you say is something like this.[?]...
Forum: Bioinformatics 09-27-2017, 06:42 PM
Replies: 3
Views: 438
Posted By GUZUMO
parameter 'seed kmer' of IDBA_ud

I just don't know what's the meaning of it.
Is there anyone explain it for me ?
Thanks !XD
Forum: Metagenomics 06-07-2017, 01:47 AM
Replies: 0
Views: 434
Posted By GUZUMO
Find single copy gene for bacteria and archaea

just as title says, I want to find and download the single copy gene for bacteria and archaea.
I know there is 107 single copy genes for bacteria(OK, actually, I'm not sure) and know nothing about...
Forum: Metagenomics 04-25-2017, 03:09 AM
Replies: 5
Views: 815
Posted By GUZUMO
Thanks, So how to understand "Match Rate" and...

Thanks,
So how to understand "Match Rate" and "Error Rate"?
is there a pdf or something that explain the result of bbmap?
Forum: Metagenomics 04-20-2017, 06:09 PM
Replies: 5
Views: 815
Posted By GUZUMO
yes,is there something wrong? thx

yes,is there something wrong?
thx
Forum: Metagenomics 04-20-2017, 02:06 AM
Replies: 5
Views: 815
Posted By GUZUMO
how to count the mapped reads with bbmap?

hello, I have assembled paired reads with Megahit, and now I want to know how many reads are uesd to make up those contigs(reads%).
I have tried bbmap and find this in STR:
Pairing data: ...
Showing results 1 to 6 of 6

 


All times are GMT -8. The time now is 11:56 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2017, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO